Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12050994 | chr16:20697868 | G/T | 4.15E-5 | 485 | 16.38 | 14.7 | 17.65 | KM Plot |
| THCA | rs12053518 | chr2:29133381 | A/G | 0.00011 | 490 | 14.3 | 15.22 | 16.07 | KM Plot |
| THCA | rs12054395 | chr3:56575434 | C/G | 4.34E-6 | 482 | 16.83 | 12.6 | 8.47 | KM Plot |
| THCA | rs12061255 | chr1:22350547 | C/T | 3.23E-5 | 472 | 14.7 | 17.73 | 12.4 | KM Plot |
| THCA | rs12065927 | chr1:200535594 | G/A | 5.2E-10 | 473 | 15.33 | 19.8 | 9.57 | KM Plot |
| THCA | rs12066886 | chr1:119152065 | C/A | 8.02E-7 | 488 | 16.07 | 15.9 | 14.57 | KM Plot |
| THCA | rs12067358 | chr1:200513719 | A/T | 7.45E-10 | 478 | 15.27 | 19.23 | 9.57 | KM Plot |
| THCA | rs12073428 | chr1:178427933 | G/A | 3.54E-9 | 475 | 15.83 | 16.37 | 8.83 | KM Plot |
| THCA | rs12082256 | chr1:45951380 | A/G | 4.1E-5 | 490 | 10.4 | 16.07 | 16.92 | KM Plot |
| THCA | rs12086203 | chr1:184126521 | G/T | 1.16E-11 | 490 | 13.62 | 18.23 | 15.23 | KM Plot |
| THCA | rs12097163 | chr1:17293660 | G/C | 0.000142 | 465 | 11.52 | 16.73 | 15.7 | KM Plot |
| THCA | rs12097905 | chr1:200513508 | G/A | 7.45E-10 | 478 | 15.27 | 19.23 | 9.57 | KM Plot |
| THCA | rs12116441 | chr1:45896920 | C/T | 7.85E-7 | 484 | 16.37 | 13.7 | 17.7 | KM Plot |
| THCA | rs12117221 | chr1:156894613 | G/T | 6.82E-7 | 480 | 16.63 | 14.87 | 11.3 | KM Plot |
| THCA | rs12120231 | chr1:102734781 | G/C | 0.000256 | 487 | 15.48 | 16.57 | 26.68 | KM Plot |